Pumpkin Cheesecake Cupcakes: Perfect Fall Dessert Recipe

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Pumpkin Cheesecake Cupcakes

Pumpkin cheesecake cupcakes combine the warm spices of fall with the creamy richness of cheesecake in perfectly portioned treats. These delightful cupcakes offer a healthier twist on traditional desserts, packed with vitamin A from pumpkin puree and containing less sugar than most bakery alternatives. Perfect for autumn gatherings, holiday parties, or cozy family dinners, they cost approximately $12-15 to make an entire batch that serves multiple people.

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Why You'll Love This Recipe

  • Rich in vitamin A and fiber from real pumpkin puree, supporting eye health and digestion while satisfying your sweet tooth
  • Individual portions make them perfect for portion control and elegant presentation at parties or family gatherings
  • Budget-friendly recipe using simple pantry staples that costs less than $15 for the entire batch
  • Combines two beloved desserts – pumpkin pie and cheesecake – into one irresistible treat that pleases all ages
  • Make-ahead friendly design allows you to prepare them a day before your event for stress-free entertaining

Why This Pumpkin Cheesecake Cupcakes Recipe Works

This recipe succeeds because it balances moisture and structure perfectly. The pumpkin puree adds natural sweetness and keeps the cupcakes incredibly moist without making them dense. The combination of granulated and brown sugar creates depth of flavor while the cream cheese frosting provides that signature cheesecake tang.

The spice blend of cinnamon and nutmeg enhances the pumpkin’s natural flavor without overwhelming it. Using room temperature ingredients ensures smooth mixing and even baking. The two-step process of making cupcakes first, then adding frosting, prevents the delicate cream cheese from breaking down during baking.

pumpkin cheesecake cupcakes food photograph 1

What You’ll Need for Perfect Pumpkin Cheesecake Cupcakes

Ingredients

IngredientQuantity (Approx)Purpose / Notes
All-purpose flour1½ cupsProvides structure and texture to cupcakes
Canned pumpkin puree1 cupAdds moisture, flavor, and vitamin A
Granulated sugar¾ cupSweetens and helps create tender crumb
Brown sugar¼ cupAdds molasses flavor and extra moisture
Large eggs2Binds ingredients and adds richness
Cream cheese (softened)8 ozCreates signature cheesecake frosting
Unsalted butter (softened)½ cupAdds richness and helps with texture
Ground cinnamon2 tspEssential fall spice for pumpkin flavor
Ground nutmeg½ tspComplements cinnamon with warm notes
Vanilla extract1 tspEnhances overall flavor profile
Powdered sugar1 cupSweetens and thickens frosting

Tools

ToolPurpose
Cupcake tinShapes cupcakes and ensures even baking
Paper linersPrevents sticking and makes removal easy
Large mixing bowlsAllows proper mixing without spills
Electric mixerCreates smooth frosting and batter
Measuring cupsEnsures accurate ingredient proportions
ToothpickTests doneness of baked cupcakes

How to Make Pumpkin Cheesecake Cupcakes

StepInstructions
1. PreparePreheat oven to 350°F (175°C) and line cupcake tin with paper liners
2. Mix dry ingredientsWhisk together flour, sugars, cinnamon, nutmeg, and pinch of salt in large bowl
3. Combine wet ingredientsMix pumpkin puree, eggs, melted butter, and vanilla until completely smooth
4. Combine mixturesGently fold wet ingredients into dry ingredients until just mixed, avoid overmixing
5. Fill and bakeFill liners two-thirds full, bake 20-25 minutes until toothpick comes out clean
6. Cool completelyAllow cupcakes to cool completely before frosting to prevent melting
7. Make frostingBeat softened cream cheese with powdered sugar until creamy and smooth
8. Frost and servePipe or spread frosting onto cooled cupcakes as desired

Chef's Helpful Tips

  • Use room temperature cream cheese and butter for the smoothest frosting texture without lumps or grittiness
  • Don’t overmix the batter once you add wet to dry ingredients – this keeps cupcakes tender and prevents tough texture
  • Test doneness with a toothpick inserted in center – it should come out with just a few moist crumbs attached
  • Cool cupcakes completely on wire rack before frosting to prevent the cream cheese from melting and sliding off
  • Store unfrosted cupcakes covered at room temperature and frost just before serving for best texture and appearance

Serving and Storage Tips for Pumpkin Cheesecake Cupcakes

Serving Tips

Serve these cupcakes at room temperature for the best flavor and texture. The cream cheese frosting tastes most delicious when it’s not too cold. Arrange them on a tiered serving stand for elegant presentation at parties or holiday gatherings.

Pair with warm apple cider or coffee for the perfect autumn experience. For special occasions, dust with cinnamon or add a small pumpkin candy on top. These cupcakes work wonderfully for family dinners alongside savory dishes.

Store frosted cupcakes in the refrigerator for up to 5 days in an airtight container. Unfrosted cupcakes keep at room temperature for 3 days. For longer storage, freeze unfrosted cupcakes for up to 3 months wrapped individually in plastic wrap.

pumpkin cheesecake cupcakes food photograph 2

Mistakes to Avoid while making Pumpkin Cheesecake Cupcakes

Don’t use pumpkin pie filling instead of pure pumpkin puree – the added spices and sugar will throw off the recipe balance. Always check your can label carefully. Using cold cream cheese creates lumpy frosting that won’t spread smoothly.

Avoid overfilling cupcake liners beyond two-thirds full, as this causes overflow and uneven baking. Don’t open the oven door frequently during baking, which causes temperature fluctuations and sunken centers.

Never frost warm cupcakes – the heat melts the cream cheese frosting and creates a mess. Wait until they’re completely cool to touch. For more dessert inspiration, try this cloud cake recipe for variety.

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You Must Know

  • Always use pure pumpkin puree, not pumpkin pie filling, which contains added sugars and spices that will alter the recipe
  • Room temperature ingredients mix more easily and create better texture – take eggs and dairy out 30 minutes before baking
  • Cream cheese frosting must be refrigerated due to dairy content – never leave frosted cupcakes at room temperature for more than 2 hours
  • These cupcakes actually taste better the next day as flavors meld together, making them perfect for advance preparation

Suggestions for Pumpkin Cheesecake Cupcakes

Transform these basic cupcakes into gourmet treats with simple additions. Fold mini chocolate chips into the batter for extra richness, or add chopped pecans for crunch. A graham cracker crumb base pressed into the bottom of each liner creates an authentic cheesecake experience.

Try different frosting variations like maple cream cheese or cinnamon buttercream. Garnish with toasted pumpkin seeds, a sprinkle of cinnamon, or caramel drizzle for professional presentation.

For dietary modifications, substitute gluten-free flour blend for regular flour, or use Greek yogurt in place of some cream cheese for lighter frosting. These pair beautifully with savory dinner options for balanced meals.

Create themed variations for different holidays – add orange food coloring for Halloween, or top with candy corn. For Thanksgiving, pipe frosting to look like turkey feathers. Check out more pumpkin cheesecake variations for inspiration.

pumpkin cheesecake cupcakes food photograph 3

FAQs:


Can I make pumpkin cheesecake cupcakes ahead of time?

Yes, these cupcakes are perfect for advance preparation. Bake the cupcakes up to 3 days ahead and store covered at room temperature. Make the frosting and frost them the day of serving for best results. You can also freeze unfrosted cupcakes for up to 3 months.


What's the difference between pumpkin puree and pumpkin pie filling?

Pumpkin puree is pure cooked pumpkin with no added ingredients, while pumpkin pie filling contains added sugars, spices, and sometimes dairy. Always use pure pumpkin puree for this recipe to control the sweetness and spice levels properly.


How do I know when my pumpkin cheesecake cupcakes are done baking?

Insert a toothpick into the center of a cupcake – it should come out with just a few moist crumbs attached, not wet batter. The tops should spring back lightly when touched, and edges will start to pull away slightly from the liners.


Can I substitute ingredients in this pumpkin cheesecake cupcake recipe?

Yes, you can make several substitutions. Use gluten-free flour for celiac diets, replace some cream cheese with Greek yogurt for lighter frosting, or substitute applesauce for half the butter to reduce calories. Each change will slightly alter texture and flavor.


How should I store leftover pumpkin cheesecake cupcakes?

Store frosted cupcakes in an airtight container in the refrigerator for up to 5 days due to the cream cheese frosting. Bring to room temperature 30 minutes before serving for best taste. Unfrosted cupcakes can stay at room temperature for 3 days.


Conclusion

These pumpkin cheesecake cupcakes deliver the perfect combination of seasonal flavor, creamy texture, and individual portion control. With simple ingredients and straightforward techniques, they’re accessible for bakers of all skill levels while impressive enough for special occasions.

The health benefits from pumpkin’s vitamin A content, combined with the recipe’s budget-friendly cost of under $15, make these cupcakes both nutritious and economical. Whether you’re planning a fall gathering or craving a cozy treat, these cupcakes capture autumn’s essence in every bite.

Try this mini pumpkin cheesecake recipe for another delicious variation, or explore this easy pumpkin cheesecake recipe for a full-sized dessert option.

More Easy desserts Recipes:

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Pumpkin Cheesecake Cupcakes


  • Author: Jennie Graham
  • Total Time: 45 minutes
  • Yield: 3 days ahead and store covered at room temperature. make the frosting and frost them the day of serving 1x

Description

Delicious fall-inspired pumpkin cupcakes topped with creamy cheesecake frosting, perfect for autumn celebrations and holiday gatherings.


Ingredients

Scale
  • 1½ cups all-purpose flour
  • 1 cup canned pumpkin puree
  • ¾ cup granulated sugar
  • ¼ cup brown sugar
  • 2 large eggs
  • 8 oz cream cheese (softened)
  • ½ cup unsalted butter (softened)
  • 2 tsp ground cinnamon
  • ½ tsp ground nutmeg
  • 1 tsp vanilla extract
  • 1 cup powdered sugar

Instructions

  1. Prepare: Preheat oven to 350°F (175°C) and line cupcake tin with paper liners
  2. Mix dry ingredients: Whisk together flour, sugars, cinnamon, nutmeg, and pinch of salt in large bowl
  3. Combine wet ingredients: Mix pumpkin puree, eggs, melted butter, and vanilla until completely smooth
  4. Combine mixtures: Gently fold wet ingredients into dry ingredients until just mixed, avoid overmixing
  5. Fill and bake: Fill liners two-thirds full, bake 20-25 minutes until toothpick comes out clean
  6. Cool completely: Allow cupcakes to cool completely before frosting to prevent melting
  7. Make frosting: Beat softened cream cheese with powdered sugar until creamy and smooth
  8. Frost and serve: Pipe or spread frosting onto cooled cupcakes as desired

Notes

  • Use room temperature cream cheese and butter for the smoothest frosting texture without lumps or grittiness
  • Don’t overmix the batter once you add wet to dry ingredients – this keeps cupcakes tender and prevents tough texture
  • Cool cupcakes completely on wire rack before frosting to prevent the cream cheese from melting and sliding off
  • Store unfrosted cupcakes covered at room temperature and frost just before serving for best texture and appearance
  • Prep Time: 20 minutes
  • Cook Time: 25 minutes
  • Category: Dessert
  • Method: Baking
  • Cuisine: American

Nutrition

  • Serving Size: 1 cupcake
  • Calories: 285 calories
  • Sugar: 28g
  • Sodium: 180mg
  • Fat: 14g
  • Saturated Fat: 9g
  • Unsaturated Fat: 5g
  • Trans Fat: 0g
  • Carbohydrates: 38g
  • Fiber: 2g
  • Protein: 5g
  • Cholesterol: 65mg

Keywords: pumpkin cheesecake cupcakes, fall desserts, autumn treats, pumpkin spice, cream cheese frosting, holiday baking

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